Six impossible things to believe before breakfast, about gene flow

Sex-biased duplicates are generated during metazoan tRNA repertoire expansion

Disentangling Complex Histories of Hybridisation: The Genomic Consequences of Ancient and Recent Introgression in Channel Island Monkeyflowers

The march to land: unearthing how gene repertoire evolution triggered terrestrialization across the Animal Tree of Life

A fresh approach for estimating selection on synonymous codons.

Estimating effective population size from ARGs: An EM-based approach incorporating coalescent time uncertainty

How museomics can be used to reveal whether insect genomes experienced recent anthropogenic changes

Insights into the development of multiple sperm types and evolving sex chromosomes in drosophila species

Coupling AI and SMC-based algorithms: Inference of population structure from single genome sequencing analysis

How and why should we sequence thousands of genomes?

Plant physiological models: what are they and can they be used to help address questions evolutionary in nature?

Evolutionary genomics of climatic adaptation and resilience to climate change in alfalfa

A haplotype-based evolutionary history of barley domestication

Molecular adaptation and the geographic spread of japonica rice in Asia

Describing wild Brassica rapa accessions and their genetic variation across Eurasia

Patterns of selection for adaptation to spatial and temporal fluctuating nitrogen availability in maize

Rest

Untangling the complex domestication of potato: A LD-based method for polyploid genomics

Archaeogenomics of maize evolution in the South American Andes

Simulation-informed population-genomic analyses reveal the Western-Himalayan origin of the common walnut

The other side of domestication: an arable weed as key model of adaptation

Domesticated plants show elevated immune receptor gene loss across lineages

Rest

Exploring cell type evolution through single-cell transcriptomics

A novel cell type enabled the transition from egg-laying to livebearing and then to placentation in fishes

Visual system cell type differences underlying divergent butterfly mate preference

A daphnia single-cell atlas of tissue-specific gene expression: insights into the evolution of cell types in reproductive systems

Comparative single-cell transcriptomics reveals variable degrees of cell-type conservation between two distantly related nematodes

Single-cell profiling of the amphioxus digestive tract reveals conservation of chordate endocrine cells

Single-cell analysis of the amphioxus hepatic caecum and vertebrate liver reveals genetic mechanisms of vertebrate liver evolution

Evolution of novel cell types in the mammalian placenta

Evolution of lung somatic cells' life beyond orgnismal death - transitioning from multicellular organisms to unicellular entities

TBA

A pandemic-scale ancestral recombination graph of SARS-CoV-2

CASTER: Direct species tree inference from whole-genome alignments

Spatial temporal evolutionary trajectory of solid tumor cells reveals clonal diversity changes during tumor progression and acquired drug resistance

Host-genetic interactions with symbionts: A cophylogenetic approach using ancestral recombination graphs

SNP2ARG: Inferring ancestral recombination graphs with deep learning

Biological causes and impacts of tree space complexity in phylodynamic inference with measurably evolving populations

Metabolism and membranes across the prokaryote tree

Historical biogeography of potamid crabs in Southern China: a phylogenomic perspective

High density cell lineage trees revealed distinct features of somatic evolution

Joint inference of cell lineage trees, genotypes and phylodynamic parameters from single-cell sequencing data.

Analyse the causality relations among genes that are associated with intellectual disability in primate brains

Stepwise recombination suppression on fungal mating-type chromosomes and evolutionary dynamics of degeneration

Complex evolution of sex chromosome within a haploid-dominant liverwort lineage

The peculiar evolution of a novel sex chromosome in an androdioecious species with two mating types

Characterization of the sex chromosome dosage compensation mechanism in Anopheles gambiae mosquitoes

Novel expression of Xist in the male white-footed deermouse Peromyscus leucopus

pSTAT3 activation of Foxl2 initiates the female pathway underlying temperature-dependent sex determination

Whole genome PoolSeq analysis reveals the coexistence and origins of three distinct levels of X-Y chromosome differentiation in the European common frog

Y chromosome evolution of East Asian populations

Relative rates of evolution on autosomes and sex chromosomes under paternal genome elimination

Unity in sex chromosome evolution hidden by diversity

TBA

Mutagenic Treatments Create Male-biased Germline Mutations in Mice

Interactions between sequence context and methylation shape the germline mutation rate of CpG sites in the human genome

Detection of de novo SNV and microsatellite mutations in primate testis and human sperm samples from HiFi sequencing

Rapid and highly variable mutagenesis of complex tandem repeats identified across four generations of a large Utah pedigree

An adaptive deep learning framework for high-resolution prediction of somatic mutations in normal and cancerous tissues

Mutation accumulation lines in mice to study mutational spectra, transcriptional phenotypic variance, and effects on fitness reduction

Determinants of de novo mutations in extended pedigrees of 43 dog breeds

Distinct temperature-dependent patterns of molecular rates across vertebrates

Reduced germline mutation rate in repeatedly evolved inbreeding social spiders

Pangenomes of scrub-jays (Aphelocoma) across a gradient of effective population sizes reveal fitness effects of structural variation

Pangenomics for De-Extinction: Towards the Great Passenger Pigeon Comeback

Exploring the impact of structural variation on adaptive evolution in Quercus based on super-pangenome

Assembly-based pangenome graphs illuminate the plasticity of mammalian gene repertoires

Complete assemblies and pangenome reference reveal unique features in the complex genomic regions of Tibetan highlanders

Evolution and maintenance of a transpecies color polymorphism

Ancient pathogens as proxies of human movements and social interactions

Ancient DNA reveals genetic barrier despite shared Avar-period culture in Eastern-Central Europe

Ancient mastics offer new insights into oral microbiome evolution and health

Ancient metagenomics reveal human-microbial interactions over an evolutionary timescale

Late Neandertals in focus: a fine-resolution paleogenetic study of Neandertal groups in North-Western Europe

Paternal Genetic Contributions from Millet and Rice Farmers to the Genetic Makeup of Southern Chinese and Southeast Asians

The dynamic genetic landscape of indigenous South Americans

Ancient genomes reveal complex genetic history of ancient populations in the western Tibetan Plateau

Improved palaeoproteomic methods allow for identification of a Pleistocene tooth from Khudji, Tajikistan, as a probable Neanderthal

Human adaptation to farming through DNA methylation

Functional innovation through new gene origination is a general evolutionary process

Evolutionary mechanisms of new gene birth and protein sequence convergence

Template switching in DNA replication generates novel microRNA genes

Solving a genetic paradox: from an essential gene to a killer

Moderate presence and evolutionary causes of paralogous compensation in humans

Evolution of retrocopies of protein-coding genes in the context of HUSH complex repression.

Using high-quality gene annotations on complete primate genomes and human pangenomes to study gene evolution

Gene expansion and evolution in detoxification and lignocellulose degradation enzymes in mangrove herbivorous crabs

The gene regulatory networks and transcription factors controlling the expression of de novo originated genes

Massive introgression and gene duplications drove sexual system transition in an algal genus Vaucheria

Monkeyflower (Mimulus) uncovers the evolutionary basis of the eukaryote telomere sequence variation

Using house mouse system to trace the evolutionary fate of newly originated gene copies

Why do human germline mutation rates depend on sex and age?

TBA

The power of coalescent methods for inferring recent and ancient gene flow in endangered Bactrian camels

Palaeogenomic study of the extinct Bubalus mephistopheles shed light on the evolutionary history of the Bubalus Genus and domestic water buffaloes

Extensive introgression obscures phylogenetic relationships among major clades of the walnut family (Juglandaceae)

Pervasive incomplete lineage sorting and ancient hybridization during the early divergence of major angiosperm lineages

Phylogenetic analysis of tetraploid species using polarized genomic sequences in the presence of introgression

Phylogenomic analyses reveal widespread hybridization events across the Potentilla s.l. genus (Rosaceae)

How to build a placenta from scratch: novel organ evolution in fish

The relationship between molecular evolution and mechanisms underlying unique anatomical development and extreme radiotolerance in tardigrades

Origin of cell differentiation in animals

Shared and Distinct Molecular Programs in Developing Human and Big Animal Brains

Evo-Devo of flowering transition, floral color and symmetry in neotropical orchids

Taurine-Driven Chemotaxis and Metamorphosis in Proto-Vertebrate Ascidian

Stepwise Co-option of Gene Regulatory Networks Drives Episodic Radiations in Flies

Less, but More: New Insights from Appendicularians on Gene Loss and Evolutionary Innovations

Hybrid speciation over space and time in the Amazon rainforests

Inferring introgression based on deep learning approach

Complex motility adaptation in a Vibrio parahaemolyticus ecospecies driven by introgression

Origin and maintenance of a shared sexual mimicry polymorphism

Evolutionary insights from nine-spined stickleback genomes: demography and admixture

A 120-year time-series of genomes reveals the consequences of closed breeding in German Shepherd Dogs

Evolution of viviparity promotes species divergence：The genetic mechanism in common lizards

Subgenome-level phylogeny reveals the reticulate effects of allopolyploidization on angiosperm evolution

The role of introgression in the sympatric speciation of Quercus acutissima and Q.variabilis

Machine learning-based population genetics analyses reveal historical and genomic impacts of introgressed variants on grape breeding

Multiple divergent Denisovan ancestries and adaptation of introgressed copy number variants in mainland Southeast Asian populations

The role of introgression in driving repeated adaptation between species of section Costatae and Betula platyphylla

The genomic insights of the early stages of sympatric homoploid hybrid speciation in crater lake cichlid fishes

The horse before and after our shared history

Ancient genomes from the Imdang-Joyeong burial complex reveal an extensive kinship network in a Three-Kingdoms period society in Korea

Grave matters: Discerning ancient DNA profiles from grave dirt vs. skeletal remains

Ancient genome analysis of human remains in the Kofun period on the Japanese archipelago.

Ancient DNA analysis unveils the genetic and demographic history of zoroastrians in India

Out-of-Anatolia: Genomic and cultural dynamics during the neolithization of Western Eurasia

Inferring castration status and age-at-death from sheepskin parchments

Reconstructing Jomon Kinship through Paleogenomic Analysis

Tracing Denisovan ancestry in early modern human genomes

Recent ancestry specific inference of archaic tracts in humans

TBA

Decode and reprogram a plant genome

Connecting distant proteins with similar structures: a path perspective

The evolutionary potential of bacterial gene regulatory elements: insights from synthetic biology and adaptive landscapes

Ancient biases in phenotype production drove the functional evolution of a protein family

Functional optimization in distinct tissues constrains the rate of protein evolution

Temperature dependence of protein fitness landscape topography

Can a nonadaptive genetic system become indispensable?

Advanced bioinformatics tools for single-cell somatic mosaicism analysis and visualization

A lineage-informed deep neural network for cellular dynamics inference using single-cell transcritpome and lineage tracing data

Coevolution of transcriptional rate parameters across vertebrates

SciPhy: A Bayesian phylogenetic framework using sequential genetic lineage tracing data

Seasonal Profile and Microevolution in Freshwater Bacterioplankton: Insights from Single-Cell Genomics

LatinCells: A human cell map of Latin American diversity

Cell-type specific evolution of the Drosophila germline transcriptome

Single-Cell Resolution of Rare Adaptive Mutations from Evolving Populations of Microbes

TBA

Terrestrial herbivory drives real-time evolution in an aquatic community via indirect effects

Resolving the Aneuploidy Paradox by Experimental Evolution

The question of epimutation: How does epigenetic information become heritable?

Experimental evolution of evolvability

Dissect cancer genome evolution during transient and stable drug resistance

Evolutionary fate of gene duplicates in different environmental contexts.

Rapid adaptation in globally distributed evolution experiment in Arabidopsis thaliana

Experimentally evolving cellular miniaturization in S. cerevisiae

Gene expression plasticity promotes cell state transition and cancer cell adaptation under nutrient deprivation

Uncovering the correlations between cell size and growth phenotypes

Adaptive structural variation in insect genomes

Genome scrambling in the Tree of Life

Chromosomal fusions linked to adaptive evolution in an invasive copepod species complex

Extensive genome evolution distinguishes maize within a stable tribe of grasses

An episodic burst of massive genomic rearrangements and the origin of non-marine annelids

Horizontal transmission of functionally diverse transposons is a major source of new introns

Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication

Chromosomal Chaos: Exploring a Dramatic Shift in the Evolution of Genome Organization in Mucoromycota

Genetic diversity and evolution of rice centromeres

TBA

Adaptive transposable elements leads to phenotypic variation via introducing cis-elements in Arabidopsis

Giant genomes of lungfishes grew by massiv TE expansion

Exploring endogenous retroviruses in ruminant genomes: They might not be all dead after all

The horizontal escape of a human retrotransposon into one contagious virus genome reveals the schizophrenic life of BC200

Transcriptional and translational signatures of ovarian aging in Drosophila melanogaster based on transposable elements

Activation and evolution of endogenous retroviruses in gall bladder

Detection of plant LTR tetrotransposons through extrachromosomal circular DNA sequencing: Insights into transposition and novel non-canonical proteins

DNA transposons mining and engineering for efficient CAR-T modification

Roles of TEs in modulating secondary metabolite biosynthesis in plants

Transposable elements as drivers of genome evolution and functional divergence following whole-genome duplication in orychophragmus

History of transposable element invasions in drosophila melanogaster

Transposable elements reconcile micro and macroevolution for adaptive genome changes

Variation in human LINE-1 retrotransposons encodes resistance to host restriction factors

Heterologous survey of DNA transposons in human cells highlights their functional divergence and expands the genome engineering toolbox

Where is the innate immune system of fungi? Molecular evolution of a fungal receptor gene family

Evolution of Erm-associated Antibiotic Resistance

The prokaryotic roots of eukaryotic immune systems

Reference-quality bat genomes illuminate clade-specific immunity to viruses

Experimental horizontal transfer of phage-derived genes to Drosophila confers innate immunity to parasitoids

Evolutionary repurposing of TLR21 as a broad-spectrum recogniser of CpG-DNA

The evolution of Drosophila's innate immune responses to bacteria

A genomic deep dive into the evolution of structural and genetic diversity of Major Histocompatibility Complex (MHC) regions of African, Asian, and South American primates

IDEA Taskforce Presentation

Skeletons in the closet: ethics, law, and politics in palaeontology

Diversifying the curriculum in a research-intensive university with staff/student co-creation

HAAM Community: Fostering collaboration, inclusivity, and sustainable research in Human Ancient DNA, Ancestry, and Mobility

Brain drain: recognising the elephant in the room

Open Discussion

Spatial transcriptomics and comparative genomics reveal key evolutionary innovations in a symbiotic bioluminescent Flashlight fish

Microbiome responses to climate-induced stressors and implications for host and ecosystem health

Interactions between the honeybee immune system and gut bacteria

Taxonomically different symbiotic communities of sympatric Arctic sponge species show functional similarity with specialization at species level

Relaxed selection on Blattabacterium genes led to convergent gene losses

Molecular adaptation of two hot-vent chemosymbiotic Alviniconcha snails revealed by multiple-omics analyses

Coevolution of host and gut bacteria via metabolism synergy during honeybee acclimation

Genomic Underpinnings of Cytoplasmic Incompatibility

Tracking and quantifying reassortment divergence of panzootic H5Nx highly pathogenic avian influenza viruses and the key drivers of its spatial heterogeneity

An expanding universe of mutational signatures and its rapid evolution in single-stranded RNA viruses

Unraveling epistatic interactions between sites under drug-dependent selection in the Mycobacterium tuberculosis genome

Genetically distinct within-host subpopulations of hepatitis C virus persist after Direct-Acting Antiviral treatment failure

Intrahost dynamics, together with genetic and phenotypic effects predict the success of viral mutations

Antagonistic selection drives SARS-CoV-2 evolution within and between host

A tale of two cancer-associated viruses

The origin and the evolution of plasmodium falciparum

Discovery of sickle haemoglobin-associated mutations in the Plasmodium falciparum genome using 6,000 infections from three populations

Malaria parasite genotype dictates asymptomatic infection in sickle cell carriers

Exploring Pathogen diversity in Patagonian Hunter-Gathers in a 6000-100-year time transect through Paleogenomics

Ancient DNA reveals 4000 years of Sheeppox virus evolution through Eurasia.

Tracing the evolutionary history of Epstein-Barr Virus using modern and ancient genomes

Tracing the evolution of Marek's disease virus virulence using ancient and historical collections

Population genomic landscapes and insights for conservation of the critically endangered island-endemic Chinese pangolin in Taiwan

Genetic rescue in Florida panthers maintained local diversity and provided temporary fitness benefits

Inbreeding load in a small and managed population: two decades of Hihi / Stitchbird (Notiomystis cincta) genomics

Impacts of habitat fragmentation and human-mediated translocations in Wallacea, a global biodiversity hotspot

1000 arctic genomes for diversity, adaptations and longevity: Polar Bear, Muksun, Beluga Whale, Bowhead Whale and others

Comparative genomics supports ecologically induced selection as a putative driver of banded penguin diversification

Convergent evolutionary deadend and breakdown of hard chorion in egg-guarding fish reproductive strategies

Integrating genomic tools to safeguard siamese crocodile genetic purity

Conservation genomics of an important mountain ungulate, Capra sibirica

Genetic diversity loss in the Anthropocene will continue long after habitat destruction ends

Molecular adaptation and conservation genomics in carnivorous bats

Population genomics studies of critically endangered hawksbill turtles in Southeast Asia

Museomics and indigenous knowledge confirm existence of the marozi - spotted lions in East Africa

Remnant island populations of Australian mammals purge genetic load

Impacts of genome architecture on rapid parallel adaptation during habitat invasions

Evolution of Darwin's Finches in the Galápagos Islands: Genomics perspectives on adaptation, speciation, and biological invasion.

From sub-Saharan Africa to China: evolutionary history and adaption of Drosophila melanogaster revealed by population genomics

Cooperation shapes bacterial niche breadth evolution and patterns of diversification

Nutritional Adaptation of Drosophila suzukii Larvae

Segregating structural variants indicate range expansions in an invasive ambrosia beetle species complex

Molecular mechanisms underlying genetic adaptation of Atlantic herring to the brackish Baltic Sea

Pathways of introduction and expansion dynamics of invasive alien species in an island ecosystem

Mobility in East and West Eurasia through the Holocene: a comparison of temporal dynamics through paleogenomics

Ancient human extinction risk: Implications from high-precision computation and fossil evidence

Out-of-Africa migration and clonal expansion of a recombinant Epstein-Barr virus drives frequent nasopharyngeal carcinoma in southern China

Gene tinkering and acid-resistance in Helicobacter pylori

Modulation of translation accuracy leads to phage resistance

Virus-Host Coexistence in Phytoplankton Through the Genomic Lens.

Mechanisms driving adaptive evolution in the cross-kingdom fungal pathogen Fusarium oxysporum

Implications of Sex-Specific Genomic Differentiation in the Great Tit (Parus major) Species Complex

TBA

Parallel adaptation in two sibling Drosophila species across global environments

A generalized structured coalescent for purifying selection without recombination

Genetic signature reveals the impact of colonial history on Mtb evolution in Taiwan

Ancient Crow DNA Reveals Phenotypic Genes Underpinning a Stable Hybrid Zone

3,023 human genomes from mainland Southeast Asia disclose hidden genetic diversity and signatures of natural selection

Population structure, dynamics, and evolution of vibrio parahaemolyticus

Somatic evolution and clonal competition in ageing human haematopoiesis

Preliminary evidence for natural selection in time-series data from Central and East Asia over the past 10,000 years

Fine-scale genetic structure and recent demographic history in the Ryukyu Archipelago

The genetic origins and impacts of historical Papuan migrations into Wallacea

The Generalized Haldane (GH) model tracking population size changes and resolving paradoxes of genetic drift

On the probability of reaching high peaks in fitness landscapes by adaptive walks

 Fluctuating selection among individuals (FSI): a new theory of molecular evolution

A narrow range of transcript-error rates across the Tree of Life

Emergence of oscillatory balanced polymorphism in age-structured populations

Assessing phylogenetic posteriors for single-cell DNA sequencing tumour data: A simulation study of variant calling parameters

The impact of non-neutral synonymous mutations when inferring selection on non-synonymous mutations

From evolutionary theory to future scenarios: A predictive model of rapid plant adaptation

Deep learning: Balancing, linkage and effects of selection (DEEPBLUES)

Distinguishing false positives from real gene-by-gene interactions between nearby variants

PLVFormer: A transformer-based tree rearrangement for phylogenetic tree search

A comprehensive representation of selection at loci with multiple alleles that allows complex forms of genotypic fitness

PhyloVAE: Unsupervised learning of phylogenetic trees via variational autoencoders

Evolutionary dynamics of polygenic adaptation under diverse ecological scenarios

Towards an integrated functional theory of protein molecular evolution

Mistranslation reduces error load in evolving proteins through negative epistasis with mistranscription

Decoding the evolutionary origins of open chromatin using deep learning in Drosophila

Accelerated evolution in the human lineage shaped regulatory networks controlling the expression of key neurodevelopmental genes

Macroevolutionary divergence of gene expression driven by selection on protein abundance

Epigenomic responses to long-term snowpack decline in a hibernating marmot

Thermal acclimation and parental effects: The role of microRNAs in a coral reef fish

Vitellogenin receptor mediates heat adaptability of oocyte development in mud crabs and zebrafish

Multiple exaptation of unrelated mobile elements shaped a hypothalamic-specific superenhancer essential for the control of food intake and body weight in the lineage leading to mammals

Canalization and de-canalization in organisms -when the transcriptome is constantly but weakly perturbed

Pervasive latent selection in the human noncoding genome

Quantifying and characterizing the rate and strength of adaptation in human genomic regulatory sequences in response to viruses

The error hypothesis of RNA variations: evidence and applications

The landscape of fitness effects of putatively functional noncoding mutations in humans

Massively parallel characterization of common and rare SNP pairs on gene regulation

Uncovering the gene regulatory changes that shaped recent human evolution

Genetic and epigenetic insights into mandibular tori in a medieval mongolian population

Native American druggable genome diversity and its impact on drug response in the Brazilian population.

Species complexes of malaria mosquitoes in North America

Joint inference of continental and archaic ancestry: A deep learning approach

Constitutively active GCGR: A key factor for birds in maintaining high blood glucose and lean body weight

Prior probability of clade splits under serial-sampled coalescent

A hotspot-aware map of structural variation in 252 haplotype-resolved assemblies

The genetic toolkit mediating metabolic division of labour across ant social networks

Predominant subfunctionalization of ohnologs in teleost and salmonid genomes following whole genome duplication

GP4PG: A metaheuristic approach to demographic modelling in population genetics

Phylogenomic insights into trait evolution and biogeography in the liverwort family Lepidoziaceae

Coral Venom in the Era of Climate Change

Coupling of habitat-preference barriers leads to reproductive isolation in sympatric speciation

Genomic evolution of ocular horn polymorphism in desert vipers

Genetic architecture of pheromone variation and prezygotic isolation in two parasitoid wasp species

Closing the 'Jurassic Gap': Integrated analysis of fossil occurrences and molecular divergence time estimation infers a latest Jurassic origin of flowering plants

Bloodhound: A deep learning approach to bacterial taxonomic classification

TOGA2 improves speed and accuracy of comparative gene annotation

The role of gene family size in cancer resistance among wild mammals

A large set of nuclear genes brings gastrotrichs into the phylogenomic era

Exploring migration patterns and metastatic evolution in colorectal cancer: A dense sampling strategy

The tempo of molecular and morphological evolution across the Tree of Life

Comparative analysis of the distribution of fitness effects of nonsynonymous mutations across diverse plant species

DNA methylation reshapes cis- and trans-regulatory landscapes during natural hybridization: A case study of F1 hybrid walnut

Ancient proteins preserve genetic sequence data >20 million years old, and offer robust, but limited, phylogenetic information

Symphony of conflict and cooperation as revealed by dynamic evolution of gene expression in sexual reproduction

Reference-quality genomes reveal the family-level phylogeny of bats

Neutral processes shape the genetic diversity of a marine microbial community

Functional olfactory polymorphisms in bark beetles

On the role of neutral diversity in interpreting Fst and LD

Lessons from ancient dog (kurī) palaeofaeces about the settlement of Aotearoa New Zealand

Bayesian Phylogenetic Inference of Protein Structure Evolution Using Angular Diffusion Model

Drivers of avian genomic change revealed by evolutionary rate decomposition

Adaptive coupling of chromosomal inversions with multi-locus ecological and mating-bias genotypes facilitates sympatric speciation

STICI: Split-Transformer with integrated convolutions for genotype imputation

Fitness Costs and Trade-offs of Pseudomonas aeruginosa in Spatially Complex Environments

Repeatable phenotypic but not genetic response to selection on body size of the black soldier fly

Determinants of de novo mutation rates

Large-scale chromosome rearrangements reshape genome architecture and lead to high karyotype diversity in ants

Horizontal gene transfer and predation facilitate kin-selected social digestion in the nematode Pristionchus pacificus

Balancing, Linkage and Effects of Selection: a Deep Learning Approach

Exact path-integral representation of the Wright-Fisher model with mutation and selection

Harnessing AI for the problem of multiple sequence alignment

Genotyping Short Tandem Repeats Across Copy Number Alterations, Aneuploidies, and Polyploid Organisms

Leaf Masquerade Mimicry in Oakleaf Butterflies

High-quality vertebrate reference genomes for a new era in biology

Adaptive stop codon recoding outside of viruses boosts energy production in horses

Extrachromosomal DNA driven oncogene spatial heterogeneity and evolution in glioblastoma

Escalation of genome defense capacity enables control of expanding meiotic drivers

Extensive structural variation and longevity-associated adaptations in nearctic Myotis bats

Net bootstrap support: Revising Felsenstein’s bootstrap support for Phylogenomics

Denisovan ancestry sheds new light on modern human dispersals into Asia

Pathogen Evolution and Social Dynamics in Colonial Mexico through Paleogenomics

Pan-Evo: The evolution of information and biology's part in this

Utilizing Identity-by-Descent segments in time-transect ancient DNA data

GhostBuster: A method for uncovering ancient hidden admixture events in genealogies

ARGMix: Inferring ancient local ancestry with transformers in ancestral recombination graphs

Joint parametric inference of complex demographic history using composite likelihood based on whole-genome genealogy

Deep-time speciation genomics of mammoth

Efficient and flexible analysis of fine-scale population structure using rare variants

Reconstructing population admixture graph using GTmix2

Ancient genomic insights into East Asian bovine and caprine domestication: Challenges, discoveries and future

Population genomic insights from ancient sediment DNA in arctic plant species

A flexible and efficient new model to infer multiple admixture dates via joint analyses of modern and/or ancient individuals

Dual origin of Turkic speaking peoples

Tracing the evolution of bacterial motility through protein structure

On the origin of de novo protein-coding genes in Arabidopsis

Genomic convergence and divergence following parallel selection of diploid and tetraploid cotton

The changing mechanism and evolvability of a conserved function

Diversity of vertebrate transposable elements in anurans

MAST-HMM: Fitting multiple trees from a single alignment with a Hidden Markov Model

Comparative phenotypic analysis of rhodopsin supports stepwise evolution of dim-light vision in early vertebrates

Gene duplication and the diverse diet of the black soldier fly

Taming the beast: adaptive introgression from dogs might explain unique behavior in Iberian gray wolves

Evolution in metazoans of the temperature-sensing transient receptor potential (TRP) ion channel families TRPV and TRPM

Gene pyramiding and genetic architecture of extreme phenotype in chicken

Genomes of antarctic and subantarctic penguins reveal local adaptation associated with facial coloration divergence

Experimental evolution of gene regulatory networks in Drosophila

Discovery of zymocin-like killer toxin gene clusters in the nuclear genomes of filamentous fungi

Flight style associated with energy metabolism predict genomic evolutionary rates in birds

Tracing cell lineage in arabidopsis reveals common mutations in progeny from different branches, rare in somatic cells of parental plant